BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB012A12SP1|AL426311
(715 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1290 1257 0.0
>3x_Contig1290
Length = 6501
Score = 1257 bits (619), Expect = 0.0
Identities = 682/715 (95%), Gaps = 4/715 (0%)
Strand = Plus / Plus
Query: 1 cacgtgataataaactctcctgaggtcaatatgatagtacatagcttaakcctgtctatc 60
||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 903 cacgtgagaataaactctcctgagg-caatatgatagtacatagcttaagcctgtctatc 961
Query: 61 acgtcattattcaaaaggtatccaakatkgtatatcgtactgactgcttccaatagactt 120
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 962 acgtcattattcaaaaggtatccaagatggtatatcgtactgactgcttccaatagactt 1021
Query: 121 acgtttgttgaacaaaaatagctcttgaaatattctattcggttgaaattccgaacagga 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1022 acgtttgttgaacaaaaatagctcttgaaatattctatgcggttgaaattccgaacagga 1081
Query: 181 acagaagttctatkaatgaacgaagcataaaatggtgaaagtgaagaacggatattgaaa 240
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1082 acagaagttctatgaatgaacgaagcataaaatggtgaaagtgaagaacggatattgaaa 1141
Query: 241 ataaaaaaaaatacttcatattataakattataaakacccaacgctagaattacgtttat 300
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 1142 ataaaaaaaaatacttcatattataagattataaagacccaacgctagaattacgtttat 1201
Query: 301 atcaaataggggtcccaaattggactagtcgagtttakgtaakgtttattkaggagatac 360
||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||
Sbjct: 1202 atcaaataggggtcccaaattggactagtcgagtttaggtaaggtttattgaggagatac 1261
Query: 361 tgaagcgaggaaaccaaaaatkagacgatcaagaggtgaatctktagaacatkatttwma 420
||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||| |
Sbjct: 1262 tgaagcgaggaaaccaaaaatgagacgatcaagaggtgaatctgtagaacatgatttaaa 1321
Query: 421 ktttttgcttaacgctkgtgwgwwttcaaataaatktggtgaatgtgggtacaccattcc 480
||||||||||||||| ||| | ||||||||||| ||||||||||||| ||||||||||
Sbjct: 1322 gtttttgcttaacgctggtgagaattcaaataaatgtggtgaatgtggg-acaccattcc 1380
Query: 481 ctacctactgttcagtgaacttgggtgtattcttgtgctgtcggtgtkcttccgtacata 540
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 1381 ctacctactgttcagtgaacttgggtgtattcttgtgcggtcggtgtgcttccgtacata 1440
Query: 541 gtgaaagtgttaggcagcagagaagatggtgctactagttatcgtgaaatctttatctct 600
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1441 g-gaaagtgttaggcagcagagaagatggtgctactag-tatcgtgaaatctttatctct 1498
Query: 601 tkatakwtggtctaagcgtgwcgttcaaactgttgccgatcttggaggaaacaaacataa 660
| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1499 tgatagatggtctaagcgtgacgttcaaactgttgccgatcttggaggaaacaaacataa 1558
Query: 661 cagcagtttttggaaccctaagaaagaacctttcccatttgayggtgacgaggat 715
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1559 cagcagtttttggaaccctaagaaagaacctttcccatttgacggtgacgaggat 1613
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.41 0.716 1.33
Gapped
Lambda K H
1.41 0.716 1.33
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5135
Number of Sequences: 1807
Number of extensions: 5135
Number of successful extensions: 208
Number of sequences better than 1.0e-20: 1
length of query: 715
length of database: 10,358,551
effective HSP length: 16
effective length of query: 699
effective length of database: 10,329,639
effective search space: 7220417661
effective search space used: 7220417661
T: 0
A: 40
X1: 5 (10.2 bits)
X2: 14 (28.4 bits)
S1: 12 (24.9 bits)
S2: 49 (100.0 bits)